Pluto Bioinformatics

GSE104545: The ARID1A tumor suppressor controls global transcription via pausing of RNA Polymerase II

Bulk RNA sequencing

We investigated the genomic consequences of the depletion of the SWI/SNF subumit ARID1A, in an ovarian cancer derived model. We produced genome wide data for nascent RNA (GRO-seq) and steady state RNA (total RNA-seq). Further, we used ChIP-seq to examine genome-wide distribution of ARID1A, as well as the changes in occupancy of RNAPII, H3K4me3 and H3K36me3. Finally we used ATAC-seq to investigate chromatin accessibility. SOURCE: Marco Trizzino (marco.trizzino83@gmail.com) - The Wistar Institute