Pluto Bioinformatics

GSE127205: RNA-seq to compare gene expression profiles between Asf1a WT and Asf1a KO cells

Bulk RNA sequencing

KrasG12D/P53-/-(KP)-Cas9 single clone was transfected with ctrl vector, ctrl sgRNA-1, ctrl-sgRNA-2 or ctrl-sgRNA-3 and then selected by using 5ug/ml Blasticidin, to get the 4 ctrl lines; KP-Cas9 single clone was transfected with Asf1a sgRNA-1, sgRNA-2, sgRNA-3 and new sgRNA-1 and then selected by using 5ug/ml Blasticidin, and then picked up single clones with Asf1a KO. For each Asf1a sgRNA, we selected one clone for RNA seq, so totally we have 4 Asf1a KO clones for RNA seq. SOURCE: Alireza Khodadadi-JamayranApplied Bioinformatics Laboratories (ABL) New York University, NYU Langone Medical Center